3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04844

Details:

PFam ID : PF04844

PFam Domain Description : Transcriptional repressor, ovate

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 167

Average sequence length: 60.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04844	E9RH63_9BETA_7_183	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04844	C5XMN8_SORBI_114_177	92.7

Sequence based PCA Plot of the family - PF04844 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=13 Length=8
Motif3 Start=29 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay