3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04841

Details:

PFam ID : PF04841

PFam Domain Description : Vps16, N-terminal region

Number of Sequence in 50% Dataset : 114

Number of Sequence in Full Dataset : 191

Average sequence length: 302.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04841	A0C012_PARTE_3_320	89.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04841	A2EYE0_TRIVA_51_403	100

Sequence based PCA Plot of the family - PF04841 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=307 Length=8
Motif2 Start=1 Length=8
Motif3 Start=196 Length=8
Motif4 Start=323 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay