3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04840

Details:

PFam ID : PF04840

PFam Domain Description : Vps16, C-terminal region

Number of Sequence in 50% Dataset : 73

Number of Sequence in Full Dataset : 153

Average sequence length: 272.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04840	Q388U4_9TRYP_727_897	72.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04840	B8BWF3_THAPS_705_1057	100

Sequence based PCA Plot of the family - PF04840 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=6 Length=8
Motif2 Start=236 Length=8
Motif3 Start=205 Length=11
Motif4 Start=23 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay