3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04835

Details:

PFam ID : PF04835

PFam Domain Description : A9 protein conserved region

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 15

Average sequence length: 50.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04835	F2WTL8_9ADEN_50_153	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04835	A2FS47_TRIVA_56_115	100

Sequence based PCA Plot of the family - PF04835 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay