3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04834

Details:

PFam ID : PF04834

PFam Domain Description : Early E3 14.5 kDa protein

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 19

Average sequence length: 96.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04834	F2WTL8_9ADEN_50_153	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04834	F2WTL8_9ADEN_50_153	100

Sequence based PCA Plot of the family - PF04834 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=44 Length=8
Motif2 Start=7 Length=28

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay