3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04833

Details:

PFam ID : PF04833

PFam Domain Description : COBRA-like protein

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 98

Average sequence length: 164.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04833	D7L8V7_ARALL_33_172	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04833	D7L8V7_ARALL_33_172	100

Sequence based PCA Plot of the family - PF04833 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=43

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay