3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04828

Details:

PFam ID : PF04828

PFam Domain Description : Glutathione-dependent formaldehyde-activating enzyme

Number of Sequence in 50% Dataset : 356

Number of Sequence in Full Dataset : 1753

Average sequence length: 89.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04828	A1DIY8_NEOFI_61_130	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04828	D5C4M1_NITHN_25_126	100

Sequence based PCA Plot of the family - PF04828 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=21 Length=8
Motif2 Start=3 Length=17
Motif3 Start=48 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay