3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04825

Details:

PFam ID : PF04825

PFam Domain Description : N terminus of Rad21 / Rec8 like protein

Number of Sequence in 50% Dataset : 66

Number of Sequence in Full Dataset : 226

Average sequence length: 111.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04825	A8P6I9_BRUMA_1_106	50.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04825	D2V3B2_NAEGR_116_254	100

Sequence based PCA Plot of the family - PF04825 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=59 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay