3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04820

Details:

PFam ID : PF04820

PFam Domain Description : Tryptophan halogenase

Number of Sequence in 50% Dataset : 199

Number of Sequence in Full Dataset : 780

Average sequence length: 290.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04820	A6G2J3_9DELT_7_129	86.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04820	B8H1R3_CAUCN_205_350	96.6

Sequence based PCA Plot of the family - PF04820 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=35 Length=8
Motif3 Start=73 Length=11
Motif4 Start=23 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay