3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04819

Details:

PFam ID : PF04819

PFam Domain Description : Family of unknown function (DUF716)

Number of Sequence in 50% Dataset : 37

Number of Sequence in Full Dataset : 147

Average sequence length: 128.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04819	F1SL02_PIG_118_199	88.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04819	D8QUR9_SELML_121_258	100

Sequence based PCA Plot of the family - PF04819 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=11
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay