3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04816

Details:

PFam ID : PF04816

PFam Domain Description : Family of unknown function (DUF633)

Number of Sequence in 50% Dataset : 128

Number of Sequence in Full Dataset : 409

Average sequence length: 195.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04816	Q6MQ02_BDEBA_90_170	96.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04816	Q00VZ1_OSTTA_74_305	100

Sequence based PCA Plot of the family - PF04816 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=55 Length=8
Motif2 Start=123 Length=11
Motif3 Start=142 Length=8
Motif4 Start=3 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay