3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04814

Details:

PFam ID : PF04814

PFam Domain Description : Hepatocyte nuclear factor 1 (HNF-1), N terminus

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 37

Average sequence length: 148.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04814	C3YP96_BRAFL_3_63	90.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04814	Q6EES3_DANRE_5_122	100

Sequence based PCA Plot of the family - PF04814 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=8 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay