3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04812

Details:

PFam ID : PF04812

PFam Domain Description : Hepatocyte nuclear factor 1 (HNF-1), beta isoform C terminus

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 24

Average sequence length: 180.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04812	C0HB63_SALSA_271_487	62.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04812	C0HB63_SALSA_271_487	100

Sequence based PCA Plot of the family - PF04812 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=77 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay