3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04809

Details:

PFam ID : PF04809

PFam Domain Description : HupH hydrogenase expression protein, C-terminal conserved region

Number of Sequence in 50% Dataset : 40

Number of Sequence in Full Dataset : 132

Average sequence length: 111.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04809	B3DWK8_METI4_161_269	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04809	E7H6D6_9BURK_149_276	100

Sequence based PCA Plot of the family - PF04809 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=35 Length=8
Motif4 Start=48 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay