3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04807

Details:

PFam ID : PF04807

PFam Domain Description : Geminivirus AC4/5 conserved region

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 71

Average sequence length: 32.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04807	E8I9I9_ECOLX_23_50	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04807	D3HIL0_9GEMI_65_89	100

Sequence based PCA Plot of the family - PF04807 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay