3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04806

Details:

PFam ID : PF04806

PFam Domain Description : EspF protein repeat

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 16

Average sequence length: 33.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04806	E8I9I9_ECOLX_23_50	60

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04806	B3Y1A1_ECO11_164_202	100

Sequence based PCA Plot of the family - PF04806 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=15 Length=18
Motif2 Start=6 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay