3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04803

Details:

PFam ID : PF04803

PFam Domain Description : Cor1/Xlr/Xmr conserved region

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 46

Average sequence length: 114.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04803	D3Z347_MOUSE_126_211	41.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04803	Q3TML4_MOUSE_70_199	100

Sequence based PCA Plot of the family - PF04803 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay