3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04802

Details:

PFam ID : PF04802

PFam Domain Description : Component of IIS longevity pathway SMK-1

Number of Sequence in 50% Dataset : 48

Number of Sequence in Full Dataset : 152

Average sequence length: 179.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04802	F1LYZ9_RAT_115_180	68.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04802	A5DWA0_LODEL_234_455	100

Sequence based PCA Plot of the family - PF04802 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=59 Length=8
Motif3 Start=173 Length=8
Motif4 Start=101 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay