3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04800

Details:

PFam ID : PF04800

PFam Domain Description : ETC complex I subunit conserved region

Number of Sequence in 50% Dataset : 17

Number of Sequence in Full Dataset : 272

Average sequence length: 97.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04800	A8PY00_MALGO_72_124	68.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04800	A8IS09_CHLRE_43_153	100

Sequence based PCA Plot of the family - PF04800 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=69 Length=11
Motif2 Start=41 Length=8
Motif3 Start=2 Length=14
Motif4 Start=93 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay