3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04794

Details:

PFam ID : PF04794

PFam Domain Description : YdjC-like protein

Number of Sequence in 50% Dataset : 175

Number of Sequence in Full Dataset : 434

Average sequence length: 242.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04794	A5GQZ9_SYNR3_135_426	94.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04794	A5GQZ9_SYNR3_135_426	100

Sequence based PCA Plot of the family - PF04794 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=56 Length=8
Motif2 Start=133 Length=8
Motif3 Start=1 Length=11
Motif4 Start=250 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay