3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04777

Details:

PFam ID : PF04777

PFam Domain Description : Erv1 / Alr family

Number of Sequence in 50% Dataset : 75

Number of Sequence in Full Dataset : 375

Average sequence length: 96.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04777	D7KQ98_ARALL_115_207	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04777	C0SFS0_PARBP_75_124	100

Sequence based PCA Plot of the family - PF04777 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=17
Motif2 Start=97 Length=8
Motif3 Start=49 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay