3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04775

Details:

PFam ID : PF04775

PFam Domain Description : Acyl-CoA thioester hydrolase/BAAT N-terminal region

Number of Sequence in 50% Dataset : 46

Number of Sequence in Full Dataset : 121

Average sequence length: 125.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04775	C8NHP5_9LACT_31_168	95.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04775	F0KA32_CLOAE_15_158	100

Sequence based PCA Plot of the family - PF04775 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=7 Length=8
Motif2 Start=50 Length=8
Motif3 Start=123 Length=8
Motif4 Start=73 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay