3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04774

Details:

PFam ID : PF04774

PFam Domain Description : Hyaluronan / mRNA binding family

Number of Sequence in 50% Dataset : 61

Number of Sequence in Full Dataset : 208

Average sequence length: 97.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04774	E9BYL2_9EUKA_11_60	90

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04774	A7RTY8_NEMVE_169_292	98.5

Sequence based PCA Plot of the family - PF04774 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=33 Length=20
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay