3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04773

Details:

PFam ID : PF04773

PFam Domain Description : FecR protein

Number of Sequence in 50% Dataset : 490

Number of Sequence in Full Dataset : 2118

Average sequence length: 97.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04773	A9RUF4_PHYPA_190_240	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04773	E3ATC4_9SPHI_104_261	99.8

Sequence based PCA Plot of the family - PF04773 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=107 Length=17
Motif2 Start=75 Length=14
Motif3 Start=132 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay