3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04769

Details:

PFam ID : PF04769

PFam Domain Description : Mating-type protein MAT alpha 1

Number of Sequence in 50% Dataset : 38

Number of Sequence in Full Dataset : 132

Average sequence length: 151.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04769	Q9UUX3_9PEZI_1_132	78.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04769	Q8J152_9PLEO_1_61	100

Sequence based PCA Plot of the family - PF04769 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=63 Length=8
Motif3 Start=139 Length=8
Motif4 Start=91 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay