3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04766

Details:

PFam ID : PF04766

PFam Domain Description : Nucleopolyhedrovirus p26 protein

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 52

Average sequence length: 219.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04766	A0EYS1_9ABAC_43_292	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04766	C3TWW9_9ABAC_7_258	100

Sequence based PCA Plot of the family - PF04766 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=178 Length=8
Motif2 Start=92 Length=8
Motif3 Start=112 Length=8
Motif4 Start=45 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay