3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04752

Details:

PFam ID : PF04752

PFam Domain Description : ChaC-like protein

Number of Sequence in 50% Dataset : 57

Number of Sequence in Full Dataset : 453

Average sequence length: 167.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04752	B9INM3_POPTR_21_61	76.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04752	E7R4H5_PICAD_7_232	100

Sequence based PCA Plot of the family - PF04752 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=2 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay