3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04750

Details:

PFam ID : PF04750

PFam Domain Description : FAR-17a/AIG1-like protein

Number of Sequence in 50% Dataset : 114

Number of Sequence in Full Dataset : 228

Average sequence length: 181.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04750	B9WDF6_CANDC_2_123	98.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04750	D8QSL3_SELML_1_128	100

Sequence based PCA Plot of the family - PF04750 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=82 Length=8
Motif4 Start=133 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay