3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04748

Details:

PFam ID : PF04748

PFam Domain Description : Divergent polysaccharide deacetylase

Number of Sequence in 50% Dataset : 110

Number of Sequence in Full Dataset : 358

Average sequence length: 204.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04748	E3MAY7_CAERE_1_288	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04748	A6GE50_9DELT_89_309	100

Sequence based PCA Plot of the family - PF04748 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=168 Length=8
Motif2 Start=13 Length=11
Motif3 Start=88 Length=8
Motif4 Start=41 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay