3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04739

Details:

PFam ID : PF04739

PFam Domain Description : 5'-AMP-activated protein kinase beta subunit, interation domain

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 215

Average sequence length: 114.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04739	E1EXQ5_GIAIA_104_219	89.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04739	A7TJ78_VANPO_580_749	99.5

Sequence based PCA Plot of the family - PF04739 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=72 Length=8
Motif3 Start=98 Length=8
Motif4 Start=125 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay