3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04738

Details:

PFam ID : PF04738

PFam Domain Description : Lantibiotic dehydratase, C terminus

Number of Sequence in 50% Dataset : 159

Number of Sequence in Full Dataset : 219

Average sequence length: 412.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04738	E4MZT5_KITSK_628_745	94.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04738	E3DTI4_BACA1_316_782	98.1

Sequence based PCA Plot of the family - PF04738 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=65 Length=8
Motif4 Start=161 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay