3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04736

Details:

PFam ID : PF04736

PFam Domain Description : Eclosion hormone

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 19

Average sequence length: 55.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04736	Q6QXM0_GVAS_1_1149	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04736	E2AXD4_9HYME_1_50	100

Sequence based PCA Plot of the family - PF04736 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=22 Length=8
Motif2 Start=13 Length=8
Motif3 Start=32 Length=8
Motif4 Start=3 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay