3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04735

Details:

PFam ID : PF04735

PFam Domain Description : Baculovirus DNA helicase

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 43

Average sequence length: 1018.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04735	Q6QXM0_GVAS_1_1149	88.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04735	Q91BE1_NPVST_10_1235	100

Sequence based PCA Plot of the family - PF04735 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=231 Length=8
Motif2 Start=290 Length=8
Motif3 Start=222 Length=8
Motif4 Start=243 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay