3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04734

Details:

PFam ID : PF04734

PFam Domain Description : Neutral/alkaline non-lysosomal ceramidase

Number of Sequence in 50% Dataset : 172

Number of Sequence in Full Dataset : 356

Average sequence length: 393.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04734	A0CEH5_PARTE_2_304	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04734	D2ESB7_9BACE_106_321	100

Sequence based PCA Plot of the family - PF04734 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=7 Length=8
Motif2 Start=82 Length=8
Motif3 Start=27 Length=11
Motif4 Start=60 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay