3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04732

Details:

PFam ID : PF04732

PFam Domain Description : Filamin/ABP280 repeat

Number of Sequence in 50% Dataset : 22

Number of Sequence in Full Dataset : 102

Average sequence length: 82.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04732	Q4RWK1_TETNG_2_55	38.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04732	Q7LZ90_TORCA_1_50	94.0

Sequence based PCA Plot of the family - PF04732 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=31 Length=8
Motif2 Start=22 Length=8
Motif3 Start=4 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay