3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04730

Details:

PFam ID : PF04730

PFam Domain Description : Agrobacterium VirD5 protein

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 11

Average sequence length: 428.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04730	A8W0J6_AGRRH_63_835	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04730	A8W0J6_AGRRH_63_835	100

Sequence based PCA Plot of the family - PF04730 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=664 Length=8
Motif2 Start=647 Length=8
Motif3 Start=145 Length=11
Motif4 Start=572 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay