3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04724

Details:

PFam ID : PF04724

PFam Domain Description : Glycosyltransferase family 17

Number of Sequence in 50% Dataset : 69

Number of Sequence in Full Dataset : 139

Average sequence length: 267.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04724	Q95RF3_DROME_220_476	89.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04724	B0D898_LACBS_4_363	100

Sequence based PCA Plot of the family - PF04724 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=118 Length=8
Motif3 Start=15 Length=8
Motif4 Start=66 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay