3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04723

Details:

PFam ID : PF04723

PFam Domain Description : Glycine reductase complex selenoprotein A

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 87

Average sequence length: 86.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04723	A2FVC5_TRIVA_5_200	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04723	D9QUG4_ACEAZ_1_149	100

Sequence based PCA Plot of the family - PF04723 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=13 Length=8
Motif2 Start=65 Length=8
Motif3 Start=4 Length=8
Motif4 Start=48 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay