3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04719

Details:

PFam ID : PF04719

PFam Domain Description : hTAFII28-like protein conserved region

Number of Sequence in 50% Dataset : 23

Number of Sequence in Full Dataset : 123

Average sequence length: 85.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04719	Q9AW46_GUITH_30_127	40.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04719	F0WE74_9STRA_48_145	100

Sequence based PCA Plot of the family - PF04719 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=23 Length=8
Motif2 Start=1 Length=8
Motif3 Start=58 Length=8
Motif4 Start=14 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay