3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04716

Details:

PFam ID : PF04716

PFam Domain Description : ETC complex I subunit conserved region

Number of Sequence in 50% Dataset : 17

Number of Sequence in Full Dataset : 121

Average sequence length: 58.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04716	A8PTS9_MALGO_37_121	56.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04716	B5B7Q0_SCHJA_43_99	100

Sequence based PCA Plot of the family - PF04716 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=18
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay