3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04715

Details:

PFam ID : PF04715

PFam Domain Description : Anthranilate synthase component I, N terminal region

Number of Sequence in 50% Dataset : 432

Number of Sequence in Full Dataset : 1859

Average sequence length: 143.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04715	Q4S232_TETNG_75_105	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04715	B7S447_PHATC_343_536	100

Sequence based PCA Plot of the family - PF04715 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=25 Length=8
Motif2 Start=1 Length=8
Motif3 Start=85 Length=8
Motif4 Start=16 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay