3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04711

Details:

PFam ID : PF04711

PFam Domain Description : Apolipoprotein A-II (ApoA-II)

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 12

Average sequence length: 67.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04711	D0MW96_PHYIT_132_261	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04711	Q67DV7_9TELE_21_95	100

Sequence based PCA Plot of the family - PF04711 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay