3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04704

Details:

PFam ID : PF04704

PFam Domain Description : Zfx / Zfy transcription activation region

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 27

Average sequence length: 150.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04704	B1H102_XENTR_64_211	5.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04704	Q7JHQ0_PIG_1_99	100

Sequence based PCA Plot of the family - PF04704 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=18
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay