3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04702

Details:

PFam ID : PF04702

PFam Domain Description : Vicilin N terminal region

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 16

Average sequence length: 110.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04702	Q98258_MCV1_4_155	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04702	B3STU4_CARIL_35_206	100

Sequence based PCA Plot of the family - PF04702 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay