3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04699

Details:

PFam ID : PF04699

PFam Domain Description : ARP2/3 complex 16 kDa subunit (p16-Arc)

Number of Sequence in 50% Dataset : 38

Number of Sequence in Full Dataset : 142

Average sequence length: 143.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04699	B2BR13_CRAGI_1_34	83.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04699	F2UC72_9EUKA_8_172	100

Sequence based PCA Plot of the family - PF04699 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=3 Length=17
Motif2 Start=150 Length=8
Motif3 Start=105 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay