3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04696

Details:

PFam ID : PF04696

PFam Domain Description : pinin/SDK/memA/ protein conserved region

Number of Sequence in 50% Dataset : 43

Number of Sequence in Full Dataset : 111

Average sequence length: 119.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04696	D6WR51_TRICA_174_248	11.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04696	C1E364_MICSR_106_244	100

Sequence based PCA Plot of the family - PF04696 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=7 Length=27
Motif2 Start=113 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay