3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04691

Details:

PFam ID : PF04691

PFam Domain Description : Apolipoprotein C-I (ApoC-1)

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 19

Average sequence length: 54.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04691	C1MQU4_MICPC_203_275	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04691	Q4QY83_SPAAU_22_82	100

Sequence based PCA Plot of the family - PF04691 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay