3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04684

Details:

PFam ID : PF04684

PFam Domain Description : BAF1 / ABF1 chromatin reorganising factor

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 24

Average sequence length: 189.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04684	A7TQF6_VANPO_253_452	15.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04684	ABF1_KLULA_1_494	91.3

Sequence based PCA Plot of the family - PF04684 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay