3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04682

Details:

PFam ID : PF04682

PFam Domain Description : Herpesvirus BTRF1 protein conserved region

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 18

Average sequence length: 225.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04682	Q86976_9GAMA_1_104	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04682	VG23_EHV2_145_415	100

Sequence based PCA Plot of the family - PF04682 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=26 Length=8
Motif2 Start=17 Length=8
Motif3 Start=8 Length=8
Motif4 Start=92 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay