3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04681

Details:

PFam ID : PF04681

PFam Domain Description : Blastomyces yeast-phase-specific protein

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 58

Average sequence length: 139.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04681	C4JWB7_UNCRE_2_113	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04681	B6QEX7_PENMQ_399_554	100

Sequence based PCA Plot of the family - PF04681 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=51 Length=8
Motif2 Start=9 Length=8
Motif3 Start=90 Length=8
Motif4 Start=117 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay